Submitted SNP(ss) Details: ss35040183

Submitted SNP(ss) Details: ss35040183

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-000566
RefSNP(rs#)	rs17099720
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGATTTCCCC CCATACAAAT TTAATAGCAG ACATAAATTG TATATCTGCT CATGTGCTGT
 ATGCATATCT GTCTTTTATA CACAAAAATA TATATTTTTG CCTTTGATGA CCAATTTTTC
 ACCCAGTTGG GGGTGATATC GCCCCCATTG AGAAAGGACA TCTTAATGGA GTAGCCTGTA
 ATCTACACCA CAAGATCAGT AAGTGACCCA TGACACCAGT GTCACCTGGT CTGATGTGGC
 ATCTCACCAG AGGAT
 Y
 GATAACAATT TTCTGGAAAA CATTTATAAA GCCAAGTGAT CTGGATTTAG AGATACTATT
 TAGATCACAG AAGGCAAGTC TGTTAAACTT TGTGTCATTA AAAAGTGACA TTCTCACAGC
 AGAATAACCA GCTGTATTTG TAGGTTAGAT AGACACAGAG AAAACAAATC AATGGCTAGA
 GAGAGGAGAA CAGATCAGCA AGAATCTGCA TAGTTCTCTG CAAGAGTGAG GCAAGATAAT
 TTTTAAATTG GAAAA

Submitted Frequency for ss35040183

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_YORUB-PANEL	24	T=0.87500000	C=0.12500000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_CEPH-PANEL	44	T=1.00000000	C=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_HISP-PANEL	44	T=1.00000000	C=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	30	T=0.83333302	C=0.16666700	MMP12-EGP_AD-022405	EGP_SNPS
EGP_ASIAN-PANEL	46	T=1.00000000	C=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040183

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-YRI	120	120	T=0.85000002	C=0.15000001	T/T=0.71666664 C/T=0.26666668 C/C=0.01666667	Pr(chiSq=0.126,df=1) =0.752	Genotype Freq.
EGP_YORUB-PANEL	24	24	T=0.87500000	C=0.12500000	T/T=0.75000000 C/T=0.25000000	Pr(chiSq=0.057,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	T=0.83333331	C=0.16666667	T/T=0.66666669 C/T=0.33333334	Pr(chiSq=0.183,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss35040183

There is no individual genotype data for ss35040183.

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