Submitted SNP(ss) Details: ss35040184

Submitted SNP(ss) Details: ss35040184

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-000658
RefSNP(rs#)	rs28360354
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TATTTTTGCC TTTGATGACC AATTTTTCAC CCAGTTGGGG GTGATATCGC CCCCATTGAG
 AAAGGACATC TTAATGGAGT AGCCTGTAAT CTACACCACA AGATCAGTAA GTGACCCATG
 ACACCAGTGT CACCTGGTCT GATGTGGCAT CTCACCAGAG GATTGATAAC AATTTTCTGG
 AAAACATTTA TAAAGCCAAG TGATCTGGAT TTAGAGATAC TATTTAGATC ACAGAAGGCA
 AGTCTGTTAA ACTTT
 K
 TGTCATTAAA AAGTGACATT CTCACAGCAG AATAACCAGC TGTATTTGTA GGTTAGATAG
 ACACAGAGAA AACAAATCAA TGGCTAGAGA GAGGAGAACA GATCAGCAAG AATCTGCATA
 GTTCTCTGCA AGAGTGAGGC AAGATAATTT TTAAATTGGA AAATTATTTT TTTTCTATAT
 TTTTCTCCTT TTCTTTAAGC CTCACTCAAG CAGCCAGCAG ACTGTTTCCC AGGCCACTGA
 GGTGGGTAAG AGCAA

Submitted Frequency for ss35040184

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	G=1.00000000	T=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_AD-PANEL	30	G=1.00000000	T=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	24	G=0.87500000	T=0.12500000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_ASIAN-PANEL	48	G=1.00000000	T=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_HISP-PANEL	44	G=1.00000000	T=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040184

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	G=0.87500000	T=0.12500000	G/G=0.75000000 G/T=0.25000000	Pr(chiSq=0.057,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040184

There is no individual genotype data for ss35040184.

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