Submitted SNP(ss) Details: ss35040186

Submitted SNP(ss) Details: ss35040186

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-001257
RefSNP(rs#)	rs28360356
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GATTTGAAGG GGTGTTGAGT AGAATCTATC CTCACACCGC AGCACCACTG CTTGCAATTC
 TACCTTTGGA ATTTTATTCC CTGACTTGTA AAAGTTTTTA GTGCTTAAAT ATTCTCTATT
 GAGTAAGAGA CAGATTCTGT GCAATGGGAC AATTAGGTCA AGAGGGAAAG AAGCTGAGGT
 GATAGGCAGA TAGATTCCAG AGGCAAACTT TTCCCATCTG CTAAAGTTGA AAAGAGTTAA
 CCCACATCCT ACCAA
 Y
 GCTAGACAAT CTAGGATGTA GGGAAAGTTT GTCTCTGGAA TCTATCCAGG TACCCAGTTG
 GGACTGAGCT TCAGCTTAGA TGTCTGAAGA TGTTAAGTTA TAGAATCAGG ATCTGAGCCG
 GTACAACACG TGGAATAAAC AATGAAGTCG ATGTTACAAA TTTTTTTTTG CTACATGTAA
 AATCTCTGTA TCACATTTCT CTAGGGAGCT GGATTCCGTT TAGAAAGCAC TCATTTACTC
 CAGGAAAAGG ATTTT

Submitted Frequency for ss35040186

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	40	C=1.00000000	T=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_HISP-PANEL	42	C=1.00000000	T=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_CEPH-PANEL	40	C=1.00000000	T=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_AD-PANEL	26	C=1.00000000	T=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	24	C=0.95833302	T=0.04166700	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040186

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.95833331	T=0.04166667	C/C=0.91666669 C/T=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040186

There is no individual genotype data for ss35040186.

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