Submitted SNP(ss) Details: ss35040187

Submitted SNP(ss) Details: ss35040187

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-001614
RefSNP(rs#)	rs28360357
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGAATCAGGA TCTGAGCCGG TACAACACGT GGAATAAACA ATGAAGTCGA TGTTACAAAT
 TTTTTTTTGC TACATGTAAA ATCTCTGTAT CACATTTCTC TAGGGAGCTG GATTCCGTTT
 AGAAAGCACT CATTTACTCC AGGAAAAGGA TTTTATTTAA TCTTTCAACA TTTACTTTAA
 AAACTTTTTT TTATCTATAA TGAATATAAG GAAAGTATTA TAATGAAAAT CAAGAATATC
 AGGCTTTAAG AAAAT
 R
 TATTTTAAGT TCTCCTTCTC TTTTAGTTGC TTGATATTTC TTTTACAAGG GCTTATTTTG
 TAGGATAGGT GGACGTAGAG GCTTATTTAT CATTTTGAAG GTACATACTC TGAATTGCTT
 GAGTGATGGA CTAGATGCTA ATTGATCCAT TGTCGTCTGA ATAAAGTCAT GCTTTTGTTT
 GCATGTTTTT GAGATAGATC AAGGGATGAT ATCAACTATG AGTCACTCAT AGGATTCATA
 TTCACAGAAC CCGGA

Submitted Frequency for ss35040187

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_YORUB-PANEL	24	A=1.00000000	G=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_AD-PANEL	30	A=1.00000000	G=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	A=1.00000000	G=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_CEPH-PANEL	44	A=1.00000000	G=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	44	A=0.97727299	G=0.02272700	MMP12-EGP_ASIAN-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040187

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	44	44	A=0.97727275	G=0.02272727	A/A=0.95454544 A/G=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040187

There is no individual genotype data for ss35040187.

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