Submitted SNP(ss) Details: ss35040188

Submitted SNP(ss) Details: ss35040188

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-001832
RefSNP(rs#)	rs2276109
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 18
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TATAATGAAA ATCAAGAATA TCAGGCTTTA AGAAAATATA TTTTAAGTTC TCCTTCTCTT
 TTAGTTGCTT GATATTTCTT TTACAAGGGC TTATTTTGTA GGATAGGTGG ACGTAGAGGC
 TTATTTATCA TTTTGAAGGT ACATACTCTG AATTGCTTGA GTGATGGACT AGATGCTAAT
 TGATCCATTG TCGTCTGAAT AAAGTCATGC TTTTGTTTGC ATGTTTTTGA GATAGATCAA
 GGGATGATAT CAACT
 R
 TGAGTCACTC ATAGGATTCA TATTCACAGA ACCCGGACTA AGGGCTATAT AAAGAGGAAC
 AGTTCAGGAA CTTAGGCTAG AAAGGAACAC AGTAAACTGA ATTGATCCGT TTAGAAGTTT
 ACAATGAAGT TTCTTCTAAT ACTGCTCCTG CAGGCCACTG CTTCTGGAGC TCTTCCCCTG
 AACAGCTCTA CAAGCCTGGA AAAAAATAAT GTGCTATTTG GTGAAGTAAG TATGGACACT
 ACAGTATTTA TCGAG

Submitted Frequency for ss35040188

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	40	A=0.97500002	G=0.02500000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_AD-PANEL	30	A=1.00000000	G=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	A=0.97727299	G=0.02272700	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	24	A=1.00000000	G=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_CEPH-PANEL	40	A=0.94999999	G=0.05000000	MMP12-EGP_CEPH-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040188

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	A=0.89380533	G=0.10619469	A/A=0.79646015 A/G=0.19469027 G/G=0.00884956	Pr(chiSq=0.074,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.90697676	G=0.09302326	A/A=0.83720928 A/G=0.13953489 G/G=0.02325581	Pr(chiSq=1.288,df=1) =0.273	Genotype Freq.
HapMap-JPT	172	172	A=0.96511626	G=0.03488372	A/A=0.93023258 A/G=0.06976745	Pr(chiSq=0.008,df=1) =1.000	Genotype Freq.
EGP_HISP-PANEL	44	44	A=0.97727275	G=0.02272727	A/A=0.95454544 A/G=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_CEPH-PANEL	40	40	A=0.94999999	G=0.05000000	A/A=0.89999998 A/G=0.10000000	Pr(chiSq=0.005,df=1) =1.000	Genotype Freq.
EGP_ASIAN-PANEL	40	40	A=0.97500002	G=0.02500000	A/A=0.94999999 A/G=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	A=0.97959185	G=0.02040816	A/A=0.95918369 A/G=0.04081633	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	A=0.96341461	G=0.03658536	A/A=0.95121950 G/G=0.02439024 A/G=0.02439024	Pr(chiSq=17.537,df=1) =0.001	Genotype Freq.
HAPMAP-CHD	170	170	A=0.97647059	G=0.02352941	A/A=0.95294118 A/G=0.04705882	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	A=0.92613637	G=0.07386363	A/A=0.86363637 A/G=0.12500000 G/G=0.01136364	Pr(chiSq=0.656,df=1) =0.439	Genotype Freq.
HAPMAP-MEX	100	100	A=0.91000003	G=0.09000000	A/A=0.83999997 A/G=0.14000000 G/G=0.02000000	Pr(chiSq=1.056,df=1) =0.317	Genotype Freq.
HAPMAP-MKK	286	286	A=0.96853149	G=0.03146853	A/A=0.93706292 A/G=0.06293707	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	A=0.84090906	G=0.15909091	A/A=0.72727275 A/G=0.22727273 G/G=0.04545455	Pr(chiSq=1.995,df=1) =0.200	Genotype Freq.

Submitted individual genotype for ss35040188

There is no individual genotype data for ss35040188.

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