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Submitted SNP(ss) Details: ss35040189           
Submitter
HandleEGP_SNPS
Submitter SNP IDMMP12-002150
RefSNP(rs#)rs28360358
Submitted Batch IDMMP12-EGP_YORUB-022405
Submitted DateFeb 28, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPFeb 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize24
PopulationEGP_YORUB-PANEL
Allele
Observed Allele-/TTTG
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35040189|allelePos=256|len=511|taxid=9606|alleles='-/TTTG'|mol=Genomic
 TTCAGGAACT TAGGCTAGAA AGGAACACAG TAAACTGAAT TGATCCGTTT AGAAGTTTAC
 AATGAAGTTT CTTCTAATAC TGCTCCTGCA GGCCACTGCT TCTGGAGCTC TTCCCCTGAA
 CAGCTCTACA AGCCTGGAAA AAAATAATGT GCTATTTGGT GAAGTAAGTA TGGACACTAC
 AGTATTTATC GAGCTTGATG TTTGTCTTTA AGATTTAATT GCATTAACCA GTTTGTTTGT
 TTGTTTGTTT GTTTG
 N
 CTTTTACGTA TCAGCTGAAA ATTGGTCTAG GAGGCTGTCT GCTTTCAGTA TTAAGTTTTA
 CTTTGTCAAA GAGGAATATA AAAAAGAGGT ATTGGTTTTG AAGGACTGTT ATGAAATTGG
 CAAGTGAACT TGTTTCTTCT TCTAAAAACC TTTGGCCAAG AAATTTCCAT TCAATATAAT
 TGGAGTTCAC TTCTGTTATG GTATTTTACA CTAATCATTA AATGCCAGTT AATAATCTGA
 GATCTGAACA ATGGC

  Submitted Frequency for ss35040189 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_YORUB-PANEL24TTTG=0.70833302
-=0.29166701
MMP12-EGP_YORUB-022405EGP_SNPS
EGP_HISP-PANEL38TTTG=0.92105299
-=0.07894700
MMP12-EGP_HISP-022405EGP_SNPS
EGP_AD-PANEL28TTTG=0.50000000
-=0.50000000
MMP12-EGP_AD-022405EGP_SNPS
EGP_ASIAN-PANEL40TTTG=0.82499999
-=0.17500000
MMP12-EGP_ASIAN-022405EGP_SNPS
EGP_CEPH-PANEL40TTTG=0.85000002
-=0.15000001
MMP12-EGP_CEPH-022405EGP_SNPS


  dbSNP summary of Genotypes for ss35040189 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_YORUB-PANEL2424TTTG=0.70833331
-=0.29166666TTTG/TTTG=0.50000000
-/TTTG=0.41666666
-/-=0.08333334
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
EGP_HISP-PANEL3838TTTG=0.92105263
-=0.07894737TTTG/TTTG=0.84210527
-/TTTG=0.15789473
Pr(chiSq=0.021,df=1)
=1.000
Genotype
Freq.
EGP_CEPH-PANEL4040TTTG=0.85000002
-=0.15000001TTTG/TTTG=0.69999999
-/TTTG=0.30000001
Pr(chiSq=0.173,df=1)
=0.752
Genotype
Freq.
EGP_AD-PANEL2828TTTG=0.50000000-/TTTG=0.71428573
TTTG/TTTG=0.14285715
-/-=0.14285715
Pr(chiSq=2.571,df=1)
=0.150
Genotype
Freq.
EGP_ASIAN-PANEL4040TTTG=0.82499999
-=0.17500000TTTG/TTTG=0.64999998
-/TTTG=0.34999999
Pr(chiSq=0.287,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss35040189 back to top
There is no individual genotype data for ss35040189.

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