Submitted SNP(ss) Details: ss35040191

Submitted SNP(ss) Details: ss35040191

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-003192
RefSNP(rs#)	rs28360359
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	22
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCTGGGTTCA GGTGATCCTA CTGACTCATC TTCCCAAGTA GCTGGGACTA CAGGCATGTG
 CCACCACTCC TGGCTAATTT TTGTATTTTT AGTAGAGACA GGGTTTCACC CTGTTGCCCA
 GGCTGGTCTC AAACTCTGGG GCTCAAGCAA TCCTTCCACC CTGGCCTCTC AAAGTGCTGG
 GATTACCGGT ATGCACCACT GTGGCCAGCC TGGGTGACCA AGAGAAACTC CTCTGTCTTA
 AAAATGAATA AATGA
 M
 GTTTTAAAAA AGATACTTCC ACTGGGATTC CGGGAATAAA TCTAGCTAAT AGTTTATGAC
 ATGTCTTTGT TTTTTTGTTT GTTTTTGTTT TTCTTTTTTT TGAGACAGGG TCTGTGTCTG
 TCATCCAGGC TGGAGTGCAG TGGTACAATC ACGGCTCACT GCAGCTTCTA CCTCCCAAGC
 TCAAGTGATC CTCTCACCTC AGCCTCCTGA GTAGCTGGGA CTACAGGCAT GCACCAACGC
 TCTGGGATAA TTTTT

Submitted Frequency for ss35040191

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	48	C=1.00000000	A=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	40	C=1.00000000	A=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_HISP-PANEL	42	C=1.00000000	A=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	22	C=1.00000000	A=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_AD-PANEL	30	C=0.96666700	A=0.03333300	MMP12-EGP_AD-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040191

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	30	30	C=0.96666664	A=0.03333334	C/C=0.93333334 A/C=0.06666667	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040191

There is no individual genotype data for ss35040191.

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