Submitted SNP(ss) Details: ss35040194

Submitted SNP(ss) Details: ss35040194

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004375
RefSNP(rs#)	rs28360361
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TAGATAAAGT AACCTCCCTC CATTGTTAAT GCTATCTCTG CTAAAATTCA TTTTCTCTAG
 AAGGAAGAAT TGTTCACTCA GGGGAGAATT GTTTGGCTTG CCAGTCCAAA GCAGATTTTA
 AAAGCTGCAA ATAGGCCAGG CACGGTGGCT CACGCCTGTA ATCCCAGCAC TTTGGGAGGC
 CAAGGTGGGT GGATCACGAG GTCAGGAGAT GGAGACCATC CTGGCCAACA TGGTGAAACC
 TCGTCTTTAC TAAAC
 W
 CACAAAAAAA TTAGCTGGGC GTGGTGGCGC GCACCTGTAG TCCCAGCTAC TCAGGAGGCT
 GAGGCAGGAG AATGGCGTGA ACCCAGGAGG CGGAGCTTGC AGTGAGCCGA GATCGTGCCA
 CTGCACTCCA GCCTAAGTAA CAAAGTGAGA CTCCATCTCA AAAAAAAAGA AAAAAAAAAT
 CTGCAAATAA AAGGAGAATG AAGCTAAATT TACTATAAAT AAGATAATTT ACTATAAAGA
 AGAGACAGGG AAGTT

Submitted Frequency for ss35040194

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	36	A=1.00000000	T=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_ASIAN-PANEL	40	A=1.00000000	T=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	44	A=1.00000000	T=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_YORUB-PANEL	24	A=1.00000000	T=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_AD-PANEL	20	A=0.94999999	T=0.05000000	MMP12-EGP_AD-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040194

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	20	20	A=0.94999999	T=0.05000000	A/A=0.89999998 A/T=0.10000000	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040194

There is no individual genotype data for ss35040194.

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