NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss35040195           
Submitter
HandleEGP_SNPS
Submitter SNP IDMMP12-004396
RefSNP(rs#)rs4323842
Submitted Batch IDMMP12-EGP_YORUB-022405
Submitted DateFeb 28, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPFeb 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize24
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35040195|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 ATTGTTAATG CTATCTCTGC TAAAATTCAT TTTCTCTAGA AGGAAGAATT GTTCACTCAG
 GGGAGAATTG TTTGGCTTGC CAGTCCAAAG CAGATTTTAA AAGCTGCAAA TAGGCCAGGC
 ACGGTGGCTC ACGCCTGTAA TCCCAGCACT TTGGGAGGCC AAGGTGGGTG GATCACGAGG
 TCAGGAGATG GAGACCATCC TGGCCAACAT GGTGAAACCT CGTCTTTACT AAACACACAA
 AAAAATTAGC TGGGC
 R
 TGGTGGCGCG CACCTGTAGT CCCAGCTACT CAGGAGGCTG AGGCAGGAGA ATGGCGTGAA
 CCCAGGAGGC GGAGCTTGCA GTGAGCCGAG ATCGTGCCAC TGCACTCCAG CCTAAGTAAC
 AAAGTGAGAC TCCATCTCAA AAAAAAAGAA AAAAAAAATC TGCAAATAAA AGGAGAATGA
 AGCTAAATTT ACTATAAATA AGATAATTTA CTATAAAGAA GAGACAGGGA AGTTTATAGA
 GTAGTCAAGA TGGAT

  Submitted Frequency for ss35040195 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
EGP_ASIAN-PANEL38G=1.00000000
A=0.00000000
MMP12-EGP_ASIAN-022405EGP_SNPS
EGP_HISP-PANEL42G=1.00000000
A=0.00000000
MMP12-EGP_HISP-022405EGP_SNPS
EGP_AD-PANEL18G=0.94444400
A=0.05555600
MMP12-EGP_AD-022405EGP_SNPS
EGP_CEPH-PANEL44G=1.00000000
A=0.00000000
MMP12-EGP_CEPH-022405EGP_SNPS
EGP_YORUB-PANEL24G=1.00000000
A=0.00000000
MMP12-EGP_YORUB-022405EGP_SNPS


  dbSNP summary of Genotypes for ss35040195 back to top
No sufficient data to compute Hardy-weinberg probability for ss35040195.


  Submitted individual genotype for ss35040195 back to top
There is no individual genotype data for ss35040195.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement