Submitted SNP(ss) Details: ss35040197

Submitted SNP(ss) Details: ss35040197

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004467
RefSNP(rs#)	rs12786343
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTGGCTTGCC AGTCCAAAGC AGATTTTAAA AGCTGCAAAT AGGCCAGGCA CGGTGGCTCA
 CGCCTGTAAT CCCAGCACTT TGGGAGGCCA AGGTGGGTGG ATCACGAGGT CAGGAGATGG
 AGACCATCCT GGCCAACATG GTGAAACCTC GTCTTTACTA AACACACAAA AAAATTAGCT
 GGGCGTGGTG GCGCGCACCT GTAGTCCCAG CTACTCAGGA GGCTGAGGCA GGAGAATGGC
 GTGAACCCAG GAGGC
 R
 GAGCTTGCAG TGAGCCGAGA TCGTGCCACT GCACTCCAGC CTAAGTAACA AAGTGAGACT
 CCATCTCAAA AAAAAAGAAA AAAAAAATCT GCAAATAAAA GGAGAATGAA GCTAAATTTA
 CTATAAATAA GATAATTTAC TATAAAGAAG AGACAGGGAA GTTTATAGAG TAGTCAAGAT
 GGATAAATGC AGAACCTGGG AGCAGGAGCA AAAAGCATAA CCTTCTATGA AAGCAAATCC
 TTCACAGTGA TGATC

Submitted Frequency for ss35040197

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	44	G=0.93181801	A=0.06818200	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	46	G=0.93478298	A=0.06521700	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_AD-PANEL	22	G=1.00000000	A=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	G=0.97727299	A=0.02272700	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	24	G=1.00000000	A=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040197

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_HISP-PANEL	44	44	G=0.97727275	A=0.02272727	G/G=0.95454544 A/G=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_CEPH-PANEL	44	44	G=0.93181819	A=0.06818182	G/G=0.86363637 A/G=0.13636364	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
EGP_ASIAN-PANEL	46	46	G=0.93478262	A=0.06521739	G/G=0.86956519 A/G=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040197

There is no individual genotype data for ss35040197.

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