Submitted SNP(ss) Details: ss35040198

Submitted SNP(ss) Details: ss35040198

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004554
RefSNP(rs#)	rs28360363
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	-/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	DIV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCAAGGTGGG TGGATCACGA GGTCAGGAGA TGGAGACCAT CCTGGCCAAC ATGGTGAAAC
 CTCGTCTTTA CTAAACACAC AAAAAAATTA GCTGGGCGTG GTGGCGCGCA CCTGTAGTCC
 CAGCTACTCA GGAGGCTGAG GCAGGAGAAT GGCGTGAACC CAGGAGGCGG AGCTTGCAGT
 GAGCCGAGAT CGTGCCACTG CACTCCAGCC TAAGTAACAA AGTGAGACTC CATCTCAAAA
 AAAAAGAAAA AAAAA
 N
 TCTGCAAATA AAAGGAGAAT GAAGCTAAAT TTACTATAAA TAAGATAATT TACTATAAAG
 AAGAGACAGG GAAGTTTATA GAGTAGTCAA GATGGATAAA TGCAGAACCT GGGAGCAGGA
 GCAAAAAGCA TAACCTTCTA TGAAAGCAAA TCCTTCACAG TGATGATCTG TGAGTTTTAA
 ATAGGAAGAA ATTAAGTTAG ATTTTGGTTA AGGAGGAGGC TGTCCAAGAA AAAATGTTTC
 TGTAGTTAAT GAAGC

Submitted Frequency for ss35040198

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	22	-=1.00000000	A=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	24	-=1.00000000	A=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_CEPH-PANEL	38	-=1.00000000	A=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	46	-=0.95652199	A=0.04347800	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_HISP-PANEL	38	-=1.00000000	A=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040198

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	46	46	-=0.95652175	A=0.04347826	-/-=0.91304350 -/A=0.08695652	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040198

There is no individual genotype data for ss35040198.

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