Submitted SNP(ss) Details: ss35040199

Submitted SNP(ss) Details: ss35040199

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004570
RefSNP(rs#)	rs28360364
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACGAGGTCAG GAGATGGAGA CCATCCTGGC CAACATGGTG AAACCTCGTC TTTACTAAAC
 ACACAAAAAA ATTAGCTGGG CGTGGTGGCG CGCACCTGTA GTCCCAGCTA CTCAGGAGGC
 TGAGGCAGGA GAATGGCGTG AACCCAGGAG GCGGAGCTTG CAGTGAGCCG AGATCGTGCC
 ACTGCACTCC AGCCTAAGTA ACAAAGTGAG ACTCCATCTC AAAAAAAAAG AAAAAAAAAA
 TCTGCAAATA AAAGG
 R
 GAATGAAGCT AAATTTACTA TAAATAAGAT AATTTACTAT AAAGAAGAGA CAGGGAAGTT
 TATAGAGTAG TCAAGATGGA TAAATGCAGA ACCTGGGAGC AGGAGCAAAA AGCATAACCT
 TCTATGAAAG CAAATCCTTC ACAGTGATGA TCTGTGAGTT TTAAATAGGA AGAAATTAAG
 TTAGATTTTG GTTAAGGAGG AGGCTGTCCA AGAAAAAATG TTTCTGTAGT TAATGAAGCA
 AGTTTTAAAA TCTGG

Submitted Frequency for ss35040199

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	38	A=1.00000000	G=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_ASIAN-PANEL	46	A=0.97826099	G=0.02173900	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	42	A=1.00000000	G=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_AD-PANEL	22	A=1.00000000	G=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	24	A=1.00000000	G=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040199

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	46	46	A=0.97826087	G=0.02173913	A/A=0.95652175 A/G=0.04347826	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040199

There is no individual genotype data for ss35040199.

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