Submitted SNP(ss) Details: ss35040200

Submitted SNP(ss) Details: ss35040200

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004797
RefSNP(rs#)	rs28360365
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	18
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAGAAAAAAA AAATCTGCAA ATAAAAGGAG AATGAAGCTA AATTTACTAT AAATAAGATA
 ATTTACTATA AAGAAGAGAC AGGGAAGTTT ATAGAGTAGT CAAGATGGAT AAATGCAGAA
 CCTGGGAGCA GGAGCAAAAA GCATAACCTT CTATGAAAGC AAATCCTTCA CAGTGATGAT
 CTGTGAGTTT TAAATAGGAA GAAATTAAGT TAGATTTTGG TTAAGGAGGA GGCTGTCCAA
 GAAAAAATGT TTCTG
 Y
 AGTTAATGAA GCAAGTTTTA AAATCTGGAC TCTTGATTTA TGAAATGATC CATTTTCCAA
 TTGTGCTAGC AAAAATGAAG TATTGTGGTA AGACAAAATA ACACTGCCTT CCATACATTT
 TTCTCTCTCT TTTTGCTGAT AAAGAATCAA TAATTACACA CCTGACATGA ACCGTGAGGA
 TGTTGACTAC GCAATCCGGA AAGCTTTCCA AGTATGGAGT AATGTTACCC CCTTGAAATT
 CAGCAAGATT AACAC

Submitted Frequency for ss35040200

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	22	T=0.90909100	C=0.09090900	MMP12-EGP_AD-022405	EGP_SNPS
EGP_YORUB-PANEL	18	T=1.00000000	C=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_ASIAN-PANEL	44	T=1.00000000	C=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_HISP-PANEL	44	T=1.00000000	C=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_CEPH-PANEL	42	T=1.00000000	C=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040200

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	22	22	T=0.90909094	C=0.09090909	T/T=0.81818181 C/T=0.18181819	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040200

There is no individual genotype data for ss35040200.

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