Submitted SNP(ss) Details: ss35040201

Submitted SNP(ss) Details: ss35040201

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-004833
RefSNP(rs#)	rs28360366
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	18
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCTAAATTTA CTATAAATAA GATAATTTAC TATAAAGAAG AGACAGGGAA GTTTATAGAG
 TAGTCAAGAT GGATAAATGC AGAACCTGGG AGCAGGAGCA AAAAGCATAA CCTTCTATGA
 AAGCAAATCC TTCACAGTGA TGATCTGTGA GTTTTAAATA GGAAGAAATT AAGTTAGATT
 TTGGTTAAGG AGGAGGCTGT CCAAGAAAAA ATGTTTCTGT AGTTAATGAA GCAAGTTTTA
 AAATCTGGAC TCTTG
 R
 TTTATGAAAT GATCCATTTT CCAATTGTGC TAGCAAAAAT GAAGTATTGT GGTAAGACAA
 AATAACACTG CCTTCCATAC ATTTTTCTCT CTCTTTTTGC TGATAAAGAA TCAATAATTA
 CACACCTGAC ATGAACCGTG AGGATGTTGA CTACGCAATC CGGAAAGCTT TCCAAGTATG
 GAGTAATGTT ACCCCCTTGA AATTCAGCAA GATTAACACA GGCATGGCTG ACATTTTGGT
 GGTTTTTGCC CGTGG

Submitted Frequency for ss35040201

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	44	A=1.00000000	G=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	42	A=1.00000000	G=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_AD-PANEL	22	A=0.95454502	G=0.04545500	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	A=1.00000000	G=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	18	A=1.00000000	G=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040201

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	22	22	A=0.95454544	G=0.04545455	A/A=0.90909094 A/G=0.09090909	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040201

There is no individual genotype data for ss35040201.

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