Submitted SNP(ss) Details: ss35040204

Submitted SNP(ss) Details: ss35040204

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-005543
RefSNP(rs#)	rs28381668
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	18
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACACATTCAG GAGGTGGGCA AAACAAACAA ACAAACAAAC AAAAAACTAA GCAAACAGGA
 AAGGAAAACA ACAAAAACCC TAACAAATTC AAAATTCTGG TTTCGAGAGA CTACATTCTG
 ACAAATGATT ATATGATGGA AAATCTTGTT CTGATTATAA TTTTGCCTCT AAATCAAATT
 TAACACTTCG TATGGGTCTC AATTTTACTC TCTGTAAATT GAGGATATTA AACTAGATCA
 TCTTGAAGAT CAGCT
 S
 TAACAATCTA TGAGGATGCT ATGAACTATG AGCTAGTTCA TTAGCATAAG CTCAGAGGAA
 CCTTAAGAAG CATAATATGA AAAGGTAAAA GCTGTTAATT AGGTGGTAAG TTTTTTTTTT
 TGAGACAAGG TCTTGCTCTG TCACTTAGGC TGGCATCACG TATCATGATG CTAACTTACT
 ACAGCCCGGA ACTCCTGTGC TCAAGCAAAC CTCCCACTTC AACCTCCCTA GTAGCTAGGA
 CCACAGGTGT GCGCT

Submitted Frequency for ss35040204

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	22	C=1.00000000	G=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_CEPH-PANEL	38	C=0.94736803	G=0.05263200	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_ASIAN-PANEL	44	C=1.00000000	G=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_HISP-PANEL	42	C=1.00000000	G=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	18	C=1.00000000	G=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040204

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_CEPH-PANEL	38	38	C=0.94736844	G=0.05263158	C/C=0.89473683 C/G=0.10526316	Pr(chiSq=0.006,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040204

There is no individual genotype data for ss35040204.

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