Submitted SNP(ss) Details: ss35040205

Submitted SNP(ss) Details: ss35040205

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-005656
RefSNP(rs#)	rs7123600
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	16
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CATTCTGACA AATGATTATA TGATGGAAAA TCTTGTTCTG ATTATAATTT TGCCTCTAAA
 TCAAATTTAA CACTTCGTAT GGGTCTCAAT TTTACTCTCT GTAAATTGAG GATATTAAAC
 TAGATCATCT TGAAGATCAG CTCTAACAAT CTATGAGGAT GCTATGAACT ATGAGCTAGT
 TCATTAGCAT AAGCTCAGAG GAACCTTAAG AAGCATAATA TGAAAAGGTA AAAGCTGTTA
 ATTAGGTGGT AAGTT
 Y
 TTTTTTTTGA GACAAGGTCT TGCTCTGTCA CTTAGGCTGG CATCACGTAT CATGATGCTA
 ACTTACTACA GCCCGGAACT CCTGTGCTCA AGCAAACCTC CCACTTCAAC CTCCCTAGTA
 GCTAGGACCA CAGGTGTGCG CTACCCACCC GGCTAATTTT TTAATTTTTT ATAGGGACAG
 GATCTTGCTA TGTTGCCTCG AGATCCTCCT GTCCCAGCCT CCCAAAGTGT TAAGATTGCA
 GGCAGCCTAG GTGAT

Submitted Frequency for ss35040205

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	22	T=0.95454502	C=0.04545500	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	T=0.75000000	C=0.25000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	16	T=0.93750000	C=0.06250000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_ASIAN-PANEL	42	T=0.80952400	C=0.19047600	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	38	T=0.60526299	C=0.39473701	MMP12-EGP_CEPH-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040205

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_HISP-PANEL	44	44	T=0.75000000	C=0.25000000	T/T=0.54545456 C/T=0.40909091 C/C=0.04545455	Pr(chiSq=0.182,df=1) =0.752	Genotype Freq.
EGP_CEPH-PANEL	38	38	T=0.60526317	C=0.39473686	C/T=0.47368422 T/T=0.36842105 C/C=0.15789473	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	22	22	T=0.95454544	C=0.04545455	T/T=0.90909094 C/T=0.09090909	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
EGP_ASIAN-PANEL	42	42	T=0.80952382	C=0.19047619	T/T=0.61904764 C/T=0.38095239	Pr(chiSq=0.401,df=1) =0.527	Genotype Freq.

Submitted individual genotype for ss35040205

There is no individual genotype data for ss35040205.

Disclaimer Privacy statement