Submitted SNP(ss) Details: ss35040207

Submitted SNP(ss) Details: ss35040207

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-005764
RefSNP(rs#)	rs28381670
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	18
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGGATATTAA ACTAGATCAT CTTGAAGATC AGCTCTAACA ATCTATGAGG ATGCTATGAA
 CTATGAGCTA GTTCATTAGC ATAAGCTCAG AGGAACCTTA AGAAGCATAA TATGAAAAGG
 TAAAAGCTGT TAATTAGGTG GTAAGTTTTT TTTTTTGAGA CAAGGTCTTG CTCTGTCACT
 TAGGCTGGCA TCACGTATCA TGATGCTAAC TTACTACAGC CCGGAACTCC TGTGCTCAAG
 CAAACCTCCC ACTTC
 M
 ACCTCCCTAG TAGCTAGGAC CACAGGTGTG CGCTACCCAC CCGGCTAATT TTTTAATTTT
 TTATAGGGAC AGGATCTTGC TATGTTGCCT CGAGATCCTC CTGTCCCAGC CTCCCAAAGT
 GTTAAGATTG CAGGCAGCCT AGGTGATAAG TTTTTGACCT AGTGAAATCC ATAAGCTCAA
 AAGCAAACAC ATACTAATTC TGTGTGTGCC AACAATTAGA GGATAAGATG GTCATCTGTA
 TGATTCATAA TATGC

Submitted Frequency for ss35040207

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	44	A=1.00000000	C=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_AD-PANEL	22	A=0.90909100	C=0.09090900	MMP12-EGP_AD-022405	EGP_SNPS
EGP_HISP-PANEL	44	A=1.00000000	C=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_YORUB-PANEL	18	A=1.00000000	C=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_CEPH-PANEL	40	A=1.00000000	C=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040207

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	22	22	A=0.90909094	C=0.09090909	A/A=0.81818181 A/C=0.18181819	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040207

There is no individual genotype data for ss35040207.

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