Submitted SNP(ss) Details: ss35040208

Submitted SNP(ss) Details: ss35040208

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-006046
RefSNP(rs#)	rs28381671
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGTGCGCTAC CCACCCGGCT AATTTTTTAA TTTTTTATAG GGACAGGATC TTGCTATGTT
 GCCTCGAGAT CCTCCTGTCC CAGCCTCCCA AAGTGTTAAG ATTGCAGGCA GCCTAGGTGA
 TAAGTTTTTG ACCTAGTGAA ATCCATAAGC TCAAAAGCAA ACACATACTA ATTCTGTGTG
 TGCCAACAAT TAGAGGATAA GATGGTCATC TGTATGATTC ATAATATGCT GACAATTTCT
 TAGATTCATA GTGAG
 S
 AAGAAAGAAA AAGTTACAGA GAATCTAAGC ATCCCTATAG AGAAACACAA GATTATACAG
 CCATGTACTT TCATGTGGTC TTGGGATAAA AATTTCAGAA TGCCCAACTG AACATTTAAT
 ACCTTGGGGG CATTTACATA AGGACTGTAA CTTACCATCC TCCTCAGATA GTTGACATGG
 GGTTAATTAA ACTCCCCTGT TATTTAGAGG AATCACTAGC ATGGGAAAAC CCTAACCATC
 ATGACAGAAG CCTTC

Submitted Frequency for ss35040208

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	44	C=1.00000000	G=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_ASIAN-PANEL	48	C=1.00000000	G=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_AD-PANEL	30	C=0.89999998	G=0.10000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_CEPH-PANEL	44	C=1.00000000	G=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_YORUB-PANEL	24	C=0.91666698	G=0.08333300	MMP12-EGP_YORUB-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040208

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.91666669	G=0.08333334	C/C=0.83333331 C/G=0.16666667	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	30	30	C=0.89999998	G=0.10000000	C/C=0.80000001 C/G=0.20000000	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040208

There is no individual genotype data for ss35040208.

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