Submitted SNP(ss) Details: ss35040209

Submitted SNP(ss) Details: ss35040209

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-006253
RefSNP(rs#)	rs28381672
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATCTGTATGA TTCATAATAT GCTGACAATT TCTTAGATTC ATAGTGAGCA AGAAAGAAAA
 AGTTACAGAG AATCTAAGCA TCCCTATAGA GAAACACAAG ATTATACAGC CATGTACTTT
 CATGTGGTCT TGGGATAAAA ATTTCAGAAT GCCCAACTGA ACATTTAATA CCTTGGGGGC
 ATTTACATAA GGACTGTAAC TTACCATCCT CCTCAGATAG TTGACATGGG GTTAATTAAA
 CTCCCCTGTT ATTTA
 R
 AGGAATCACT AGCATGGGAA AACCCTAACC ATCATGACAG AAGCCTTCTT AATTTTTCTA
 TTGGAAATTT TAGATTCTAT GACTCCCTCA TGTGGAAAGT AAATGAGGAG AAAGTCATCA
 ATAATATTCT CTACTCAGCA TCCTCCTCTC TAGCTGATAT TGCACAAGTT GGATGGCAAT
 ACTTTTATAA ATACTATGTC CACCAGAAAG ACTATTTGTT TTAGTCTAAC ACATAGCCTA
 AGGCTTATAA AGTTT

Submitted Frequency for ss35040209

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	44	G=1.00000000	A=0.00000000	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	30	G=0.89999998	A=0.10000000	MMP12-EGP_AD-022405	EGP_SNPS
EGP_CEPH-PANEL	44	G=1.00000000	A=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_YORUB-PANEL	24	G=1.00000000	A=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_ASIAN-PANEL	48	G=1.00000000	A=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040209

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	30	30	G=0.89999998	A=0.10000000	G/G=0.80000001 A/G=0.20000000	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040209

There is no individual genotype data for ss35040209.

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