Submitted SNP(ss) Details: ss35040210

Submitted SNP(ss) Details: ss35040210

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP12-006357
RefSNP(rs#)	rs28381673
Submitted Batch ID	MMP12-EGP_YORUB-022405
Submitted Date	Feb 28, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 28 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY856072
Submitted Gene Name	MMP12
Submitted Gene ID	4321
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	-/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	DIV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TACAGCCATG TACTTTCATG TGGTCTTGGG ATAAAAATTT CAGAATGCCC AACTGAACAT
 TTAATACCTT GGGGGCATTT ACATAAGGAC TGTAACTTAC CATCCTCCTC AGATAGTTGA
 CATGGGGTTA ATTAAACTCC CCTGTTATTT AGAGGAATCA CTAGCATGGG AAAACCCTAA
 CCATCATGAC AGAAGCCTTC TTAATTTTTC TATTGGAAAT TTTAGATTCT ATGACTCCCT
 CATGTGGAAA GTAAA
 N
 GAGGAGAAAG TCATCAATAA TATTCTCTAC TCAGCATCCT CCTCTCTAGC TGATATTGCA
 CAAGTTGGAT GGCAATACTT TTATAAATAC TATGTCCACC AGAAAGACTA TTTGTTTTAG
 TCTAACACAT AGCCTAAGGC TTATAAAGTT TTTGAAGAGA AGAGGACTTT TGTATTGTCA
 AAAGACAGAT CATGTAGGAT TAGGTAGTTG CTAAACTGCA AATCCTCAGC CAGACATGTT
 ATATGTGCCT AAATT

Submitted Frequency for ss35040210

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	44	T=0.97727299	-=0.02272700	MMP12-EGP_HISP-022405	EGP_SNPS
EGP_ASIAN-PANEL	48	T=1.00000000	-=0.00000000	MMP12-EGP_ASIAN-022405	EGP_SNPS
EGP_CEPH-PANEL	44	T=1.00000000	-=0.00000000	MMP12-EGP_CEPH-022405	EGP_SNPS
EGP_YORUB-PANEL	24	T=1.00000000	-=0.00000000	MMP12-EGP_YORUB-022405	EGP_SNPS
EGP_AD-PANEL	30	T=1.00000000	-=0.00000000	MMP12-EGP_AD-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35040210

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_HISP-PANEL	44	44	T=0.97727275	-=0.02272727	T/T=0.95454544 -/T=0.04545455	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35040210

There is no individual genotype data for ss35040210.

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