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Submitted SNP(ss) Details: ss43722884           
Submitter
HandleABI
Submitter SNP IDhCV1847090
RefSNP(rs#)rs10961515
Submitted Batch IDxplore_hum_chr9_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43722884|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TGGTACTTAG TAAGTGCTTA ATAAATATTA GCTATACTTT GGCCACCCCA GATGTGGGAG
 TGAGCTTCCC TGAGCCTCAG GCCAGAAAGA GGGGGTGCCA GGAGAGCTGG CACATGCTGA
 GCCCCAGAAG TGGCCTGAGG TTGAGGGACT GGGCTCTGTT TATGAGAAGT GGTCAGGGCC
 AAGGGGTGAG TTGGACACCA GATGGGCCAG AGTGCCTCAG GGTCCGGACA GGTGGTTCCA
 ATTCCAGAGA TAGGGACATG ATAGGGGCAT GTGAGGAAAA CAAGTAGAGA GGCAAAAACA
 Y
 GGTGTAAGGG TTGAAAACAC CCCCGAGGCG GAAGCCGTTT GCCCCAGTTT TGGGTTGGCA
 CATTGCCTTT TCTGCCCTAT ATGAACCAAT ATCTCAGTCA ATTTCGTCAG GAGCTAAGTA
 GGCAGGGCAG GAGAAGAACT TTGGGGTGGG AATTGGAAGG AGAGGGGGTG GCTGAGCCAC
 ATGGGAGCTG GAAGTCCTTC CTCAAAGCCC TCCTCTGTAG AACGATCCAG GCATTTGGCT
 CACCAGGTGG ACCTACTTTT TGTCTAGATT TGTTCTTATA GTGGTGACAA TGAGCTTGCT

  Submitted Frequency for ss43722884 back to top
There is no frequency submission for ss43722884.


  dbSNP summary of Genotypes for ss43722884 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.58333331
T=0.41666666C/T=0.50000000
C/C=0.33333334
T/T=0.16666667
Pr(chiSq=0.049,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.62222224
T=0.37777779C/T=0.44444445
C/C=0.40000001
T/T=0.15555556
Pr(chiSq=0.134,df=1)
=0.752
Genotype
Freq.
HapMap-JPT9090C=0.72222221
T=0.27777779C/C=0.48888889
C/T=0.46666667
T/T=0.04444445
Pr(chiSq=1.197,df=1)
=0.294
Genotype
Freq.
HapMap-YRI120120C=0.90833336
T=0.09166667C/C=0.83333331
C/T=0.15000001
T/T=0.01666667
Pr(chiSq=0.591,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss43722884 back to top
There is no individual genotype data for ss43722884.

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