NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss43812526           
Submitter
HandleABI
Submitter SNP IDhCV113576
RefSNP(rs#)rs4439323
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43812526|allelePos=301|len=601|taxid=9606|alleles='A/C'|mol=Genomic
 GTGGTGTGCA TCATGGTCTA TCAATATAAG TGCTTAGCAC CTAATAGAGG CTCAATGCAT
 GTTTAGTAAA TGAATAAAAA GTCATCTAAA GTGTAAAATT TAATTTTGAG AATTTTTACT
 GAAGATAAGA ATGTTTCATA TGTATTTTGT TTCATGATCA CTAATCCTTA TGCTGAATAA
 ACAAAAAGGT GGAAATTAAA TCAATGAAAC AAATTTATCA CTGTTCATTC ACCAGCAGTT
 ATTGAAGAAC CTCTATGTGC AAAAAACTAT CCTATGTAGT CAATGGTAAC AGGCATACAT
 M
 CACTCAGACA TACTACATCC CTGCTCTTAA AGAGATTAAG AAATCTTTCA GTGTAATAGC
 AATGTTTCAT TCTGTACTGT GTCCCCAGTG CCTAGTTCAG CACTCCTTAC CATATAACAG
 ACATTGGCCT ATTATTAATG AGGTAAGAAA AATATGAATG AACTTGGAGA TCAAAGTAAT
 GAGTTAACTC TATTAAAATT GTGTGTTGTG TGTGTGTGTG TGTGTCTTTA TGTGTACATG
 AGAGAGAGAG AGATAATGAG ATATGGTAGG GGTACAGTTT CCTTTAATGG TATAAACAAA

  Submitted Frequency for ss43812526 back to top
There is no frequency submission for ss43812526.


  dbSNP summary of Genotypes for ss43812526 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.68333334
A=0.31666666C/C=0.48333332
A/C=0.40000001
A/A=0.11666667
Pr(chiSq=0.344,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.63333333
A=0.36666667A/C=0.51111114
C/C=0.37777779
A/A=0.11111111
Pr(chiSq=0.454,df=1)
=0.527
Genotype
Freq.
HapMap-JPT8888C=0.70454544
A=0.29545453C/C=0.52272725
A/C=0.36363637
A/A=0.11363637
Pr(chiSq=0.705,df=1)
=0.403
Genotype
Freq.
HapMap-YRI120120C=0.70833331
A=0.29166666C/C=0.48333332
A/C=0.44999999
A/A=0.06666667
Pr(chiSq=0.476,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss43812526 back to top
There is no individual genotype data for ss43812526.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement