Submitted SNP(ss) Details: ss48399189

Submitted SNP(ss) Details: ss48399189

Submitter
Handle	EGP_SNPS
Submitter SNP ID	SLC4A2-000887
RefSNP(rs#)	rs35403834
Submitted Batch ID	SLC4A2-EGP_YORUB-090605
Submitted Date	Sep 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Sep 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ149844
Submitted Gene Name	SLC4A2
Submitted Gene ID	6522
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCCCAGCGCT GACCTGGTTG GTGGCATTGT GTTCCCAACG GCCTCTTGAC GACCTCAGCA
 CGGGTTTCCA CCTCTCCCCA AGCCACCTAG TGACCCCAGA ATTGACTGGG GAATGCCTGT
 GAGCGATGAT GACCTCACAG GGAACAGCTG ACCGCAGGGC TGGGAGAACA GCTGTGCCCC
 TTCGAGGCTG GATTTTAGTG GAGGGACACA CGCCAAAGAC CCCCTCTCTG CTGAGCCCCG
 TTTGTTGTCT CGGAG
 S
 CCACCCGACT CTAGCCGCTG AACTCTGACA TGCTGAGGAA AACTGGGTGG AGCCCTGGGG
 GTCCCCCTCA GACCCCAGTC TCCGGAACAG GGCCCACTGG AGTCAGCCAG GGTGTGGCAG
 GCAGGTTGGT TAACCCCCTC CACAGACAAG ACCACAGACC GATGCTCAAC TTGCAGCAGC
 CTCTGCCTCA CCCCTTAAAG GAGCTGATTA TAGATTCCCT TACGCTGCCT CTCTAATTGT
 CTCATGATTG CATTC

Submitted Frequency for ss48399189

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	42	C=1.00000000	G=0.00000000	SLC4A2-EGP_HISP-090605	EGP_SNPS
EGP_ASIAN-PANEL	48	C=0.97916698	G=0.02083300	SLC4A2-EGP_ASIAN-090605	EGP_SNPS
EGP_YORUB-PANEL	24	C=1.00000000	G=0.00000000	SLC4A2-EGP_YORUB-090605	EGP_SNPS
EGP_CEPH-PANEL	40	C=1.00000000	G=0.00000000	SLC4A2-EGP_CEPH-090605	EGP_SNPS
EGP_AD-PANEL	30	C=1.00000000	G=0.00000000	SLC4A2-EGP_AD-090605	EGP_SNPS

dbSNP summary of Genotypes for ss48399189

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	48	48	C=0.97916669	G=0.02083333	C/C=0.95833331 C/G=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss48399189

There is no individual genotype data for ss48399189.

Disclaimer Privacy statement