Submitted SNP(ss) Details: ss48399195

Submitted SNP(ss) Details: ss48399195

Submitter
Handle	EGP_SNPS
Submitter SNP ID	SLC4A2-002459
RefSNP(rs#)	rs3834872
Submitted Batch ID	SLC4A2-EGP_YORUB-090605
Submitted Date	Sep 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Sep 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ149844
Submitted Gene Name	SLC4A2
Submitted Gene ID	6522
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	-/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	DIV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCGGGGAACC GCGGTCTTGG GGAGAAGGAT GGGGAGGCGG ATGGAGTGCT GGTCGGAAGC
 GGGCATTCCG GGGTCCCCTT CTCAGAGTTC CCTAAAGCCA GGGTGCCGCG CCCCCTGCCA
 CCAGGAGGGG GTAGTCTCCC CGAGGCGCCG CCGGCCCTCC CACTCCCCGG CTGGCTCCAG
 ACCACCCCTC CCCTCCGGCC CCCCCGCATA GTCCTTCAGT CCCGTCCGGG GCGCCCAGAC
 TGGGGGTTGC CCGGG
 N
 CCCCCATCCC CAATCTCCGG GTTGAGAGGC GAAGCCAGGA AAGGCGGGTG GCGGGTAAGG
 TCGGGACAAG GGGTCAGACA GAAGAGGGAG CAGCTGGGTG GGAATGGGAA AGATGAGCCC
 GGAGAGTTGG ACCTGACTCC CGGGGTCGGT TTGTCCAGGC GGGGAGTTCT GTGCTGGGTG
 TGAGAGGCGG CACTGCCTGA AACCCAGGGT CTACTTTATC CCCCTTCGTT TCCCCCGCCA
 GCCCCACATG GAAGA

Submitted Frequency for ss48399195

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_YORUB-PANEL	24	G=1.00000000	-=0.00000000	SLC4A2-EGP_YORUB-090605	EGP_SNPS
EGP_CEPH-PANEL	44	G=1.00000000	-=0.00000000	SLC4A2-EGP_CEPH-090605	EGP_SNPS
EGP_AD-PANEL	26	G=1.00000000	-=0.00000000	SLC4A2-EGP_AD-090605	EGP_SNPS
EGP_HISP-PANEL	42	G=1.00000000	-=0.00000000	SLC4A2-EGP_HISP-090605	EGP_SNPS
EGP_ASIAN-PANEL	34	G=0.82352901	-=0.17647099	SLC4A2-EGP_ASIAN-090605	EGP_SNPS

dbSNP summary of Genotypes for ss48399195

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_ASIAN-PANEL	34	34	G=0.82352942	-=0.17647059	G/G=0.64705884 -/G=0.35294119	Pr(chiSq=0.251,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss48399195

There is no individual genotype data for ss48399195.

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