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Submitted SNP(ss) Details: ss5606695           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-000329
RefSNP(rs#)rs1573601
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606695|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 AATACTTAAT ATTATTACTA TTATTTAATA ATATTTAGAA CTGTGCCATC CCTGTTTCAA
 TTTATCAGGC TCCCAGCAGA CTACTCCTTA TCTTTCAAAT GTCAAAACTG CATCCTGAGC
 TCTTGCCTAA ACTAATCTGG GGTGAGGTGA ATGGAAGTAG CACTTTAATT GTATTCATTC
 TTTGTAGCTG GACCTGGGCC TGGGCCCTAT CTCCTGACAT TTGCCCACAA GAAAGATTTC
 TGAAGTTAGG TAGGA
 M
 TGGCTGTTGA GTAGGCCAGT GCTTGCCAAA CCTTTACACA TCCTCACATA TGTCATAATA
 TGCAGATAAA AAGATAATCC CTTATACAAC TTGCTGGGAT AAACTCAGGA GGCTTACAGC
 CATGACCTGC TTGAAGGTTC TTCCTGCCTT AGACCTTGCT CAGCTGCTCC AGGATGAGGG
 GATTTACATC ACAGCACAAC TGTATTTTAT TCACAGCATA AACCATCTCT TTCCTTCTCA
 GTTGACGAGT TCAGA

  Submitted Frequency for ss5606695 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90162C=0.80864203
A=0.19135800
0.309 +/-0.054RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606695 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90162162C=0.80864197
A=0.19135803C/C=0.66666669
A/C=0.28395063
A/A=0.04938272
Pr(chiSq=0.551,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss5606695 back to top
There is no individual genotype data for ss5606695.

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