Submitted SNP(ss) Details: ss5606696

Submitted SNP(ss) Details: ss5606696

Submitter
Handle	EGP_SNPS
Submitter SNP ID	RB1-000564
RefSNP(rs#)	rs3092871
Submitted Batch ID	RB1-PDR90-102902
Submitted Date	Dec 04, 2002
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Dec 4 2002 12:00:00:000AM

Resource Links
GenBank Accession	AF551763
Submitted Gene Name	RB1
Submitted Gene ID	5925
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	162
Population	PDR90

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATTTCTGAAG TTAGGTAGGA CTGGCTGTTG AGTAGGCCAG TGCTTGCCAA ACCTTTACAC
 ATCCTCACAT ATGTCATAAT ATGCAGATAA AAAGATAATC CCTTATACAA CTTGCTGGGA
 TAAACTCAGG AGGCTTACAG CCATGACCTG CTTGAAGGTT CTTCCTGCCT TAGACCTTGC
 TCAGCTGCTC CAGGATGAGG GGATTTACAT CACAGCACAA CTGTATTTTA TTCACAGCAT
 AAACCATCTC TTTCC
 Y
 TCTCAGTTGA CGAGTTCAGA TGGGCAATAA CAGTGTCTGC CAAAGAGAAA AAAAAATGTA
 TTCAAACTAG ATAATCTATT GGTACAAATA CCGAGACACA GAAGTGATAA CAGCTTTAAG
 CCAATGTTTG ATGGTGGTAG TCCCAGCAAG CTCTTTTCTG ATGTCTTTGT GCCTTTGCAC
 ATGCTCCTTC TCTGTCACTG TTTTCTTCAT CAAACATAAT ATAATGGACA AGTGGAATCA
 AATAGAATTG AGTTC

Submitted Frequency for ss5606696

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	162	T=0.97530901	C=0.02469100	0.048 +/-0.033			RB1-PDR90-102902	EGP_SNPS

dbSNP summary of Genotypes for ss5606696

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	162	162	T=0.97530866	C=0.02469136	T/T=0.95061731 C/T=0.04938272	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	T=0.92477876	C=0.07522124	T/T=0.84955752 C/T=0.15044248	Pr(chiSq=0.108,df=1) =0.752	Genotype Freq.
HAPMAP-ASW	98	98	T=0.96938777	C=0.03061225	T/T=0.93877554 C/T=0.06122449	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	T=0.93888891	C=0.06111111	T/T=0.87777776 C/T=0.12222222	Pr(chiSq=0.045,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	T=0.92307693	C=0.07692308	T/T=0.85314685 C/T=0.13986014 C/C=0.00699301	Pr(chiSq=0.033,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss5606696

There is no individual genotype data for ss5606696.

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