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Submitted SNP(ss) Details: ss5606697           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-001015
RefSNP(rs#)rs4151416
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize150
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606697|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 CACTGTTTTC TTCATCAAAC ATAATATAAT GGACAAGTGG AATCAAATAG AATTGAGTTC
 AAATTCTCTG CTACCCATCG GCCCTGGTAT TGGACAAATT AACTCCTCTG AGCCTGTTTC
 CTCATCTGCA ACGTAGACTA GCTAATACTA CCCATTGGAA AGCGTTGTTT CTTAGCTAAT
 GCATGCAAGG CTTAAAACCT AGATGACGGG TTGATAGGTG CAGCAAACCT CCATGGCATA
 CGTATGCCTA TGTAA
 M
 AAACCTACAC GTTCTGCACT TGTATCCCGG AACTTAAAGT AAAAAAAAAA AAAAAAAAAA
 AAAAGAAAGA AAGAAAAAGA AAAAAAAGGC TGTTTCTGGG GATTAAATAA GACAATTATG
 TAAGGTGGCC AGCACAGTTC CTGGTACATA GTAAATGTCA GGCCTGCCTG ACAGACTTCT
 ATTCAGCAGC TACTGCTCCC CTGAAAATCT TCCTCAGACG TTTCCCCGGT GCTTCCCGTT
 CTTACACCAC TACAA

  Submitted Frequency for ss5606697 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90150C=0.98666698
A=0.01333300
0.026 +/-0.026RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606697 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90150150C=0.98666668
A=0.01333333C/C=0.97333336
A/C=0.02666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606697 back to top
There is no individual genotype data for ss5606697.

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