Submitted SNP(ss) Details: ss5606699

Submitted SNP(ss) Details: ss5606699

Submitter
Handle	EGP_SNPS
Submitter SNP ID	RB1-001679
RefSNP(rs#)	rs4151418
Submitted Batch ID	RB1-PDR90-102902
Submitted Date	Dec 04, 2002
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Dec 4 2002 12:00:00:000AM

Resource Links
GenBank Accession	AF551763
Submitted Gene Name	RB1
Submitted Gene ID	5925
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	178
Population	PDR90

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 6
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTTTTGGCCG ACTTTGCAAA ACGGATTGGG CGGGATGAGA GGTGGGGGGC GCCGCCCAAG
 GAGGGAGAGT GGCGCTCCCG CCGAGGGTGC ACTAGCCAGA TATTCCCTGC GGGGCCCGAG
 AGTCTTCCCT ATCAGACCCC GGGATAGGGA TGAGGCCCAC AGTCACCCAC CAGACTCTTT
 GTATAGCCCC GTTAAGTGCA CCCCGGCCTG GAGGGGGTGG TTCTGGGTAG AAGCACGTCC
 GGGCCGCGCC GGATG
 Y
 CTCCTGGAAG GCGCCTGGAC CCACGCCAGG TTTCCCAGTT TAATTCCTCA TGACTTAGCG
 TCCCAGCCCG CGCACCGACC AGCGCCCCAG TTCCCCACAG ACGCCGGCGG GCCCGGGAGC
 CTCGCGGACG TGACGCCGCG GGCGGAAGTG ACGTTTTCCC GCGGTTGGAC GCGGCGCTCA
 GTTGCCGGGC GGGGGAGGGC GCGTCCGGTT TTTCTCAGGG GACGTTGAAA TTATTTTTGT
 AACGGGAGTC GGGAG

Submitted Frequency for ss5606699

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	178	C=0.98314601	T=0.01685400	0.033 +/-0.026			RB1-PDR90-102902	EGP_SNPS

dbSNP summary of Genotypes for ss5606699

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	178	178	C=0.98314607	T=0.01685393	C/C=0.96629214 C/T=0.03370786	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HapMap-CEU	226	226	C=0.99115044	T=0.00884956	C/C=0.98230088 C/T=0.01769911	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	C=0.99431819	T=0.00568182	C/C=0.98863637 C/T=0.01136364	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	C=0.99431819	T=0.00568182	C/C=0.98863637 C/T=0.01136364	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss5606699

There is no individual genotype data for ss5606699.

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