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Submitted SNP(ss) Details: ss5606700           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003271
RefSNP(rs#)rs4151419
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize144
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606700|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 AGTGGTTCTG TGCGCAAATG GAAATTTTCG TTTTCCCTTA TTAAGTGGAA TCTAAATTTA
 AGCAAGTCCA TACGAATGCA CTAGATCTTG AAGGGAAGTA TTTATTGTAT TACAACATCT
 TACTTTTCTT GATTTTTCTA CTTTATGGTT AAATAGCTAT GATTGAAAGA GTGTAATTGT
 CATTATTGTC AGCACTGGTT CTACTTTGAG ACAAGTTCAT TGCAGAGGGA ATGGGACTTG
 TTTCTGTTTT TCACT
 R
 TTTTCTCTCC CATTCTTGTC TATCACCAAA TCCTTTCACC CTCACCCATT TCTTTCCACT
 CGGTATACAC TAACAATTCA CGGCAGAAAA GATTGAAGTG GGATTTAGGA AATGGCCCCT
 GGAAGGCTAT TAAAAATTTA TATATTTAAA TGGACTGTCT TATAGGTCAG TTAAAAACCA
 TATTCGTTAA AAAACCAAAA TAACAACAAC AAAAAATTAA AAACCACGTC TGGGGCATGT
 TCTGGGAAAA GACAT

  Submitted Frequency for ss5606700 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90144A=0.98611099
G=0.01388900
0.027 +/-0.027RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606700 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90144144A=0.98611110
G=0.01388889A/A=0.97222221
A/G=0.02777778
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606700 back to top
There is no individual genotype data for ss5606700.

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