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Submitted SNP(ss) Details: ss5606701           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003371
RefSNP(rs#)rs4151420
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize150
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606701|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTTATTGTAT TACAACATCT TACTTTTCTT GATTTTTCTA CTTTATGGTT AAATAGCTAT
 GATTGAAAGA GTGTAATTGT CATTATTGTC AGCACTGGTT CTACTTTGAG ACAAGTTCAT
 TGCAGAGGGA ATGGGACTTG TTTCTGTTTT TCACTATTTT CTCTCCCATT CTTGTCTATC
 ACCAAATCCT TTCACCCTCA CCCATTTCTT TCCACTCGGT ATACACTAAC AATTCACGGC
 AGAAAAGATT GAAGT
 R
 GGATTTAGGA AATGGCCCCT GGAAGGCTAT TAAAAATTTA TATATTTAAA TGGACTGTCT
 TATAGGTCAG TTAAAAACCA TATTCGTTAA AAAACCAAAA TAACAACAAC AAAAAATTAA
 AAACCACGTC TGGGGCATGT TCTGGGAAAA GACATGGCTT TAGTTTCTGA TTAAATTCTG
 ATGTATCCAA TTCTTGCAAA TTTCCCTTGG GAAAATGCAG TAATGGCTAC TCTAAAGAAT
 TCCATGTTAT GCACA

  Submitted Frequency for ss5606701 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90150G=0.99333298
A=0.00666700
0.013 +/-0.019RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606701 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90150150G=0.99333334
A=0.00666667G/G=0.98666668
A/G=0.01333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-CEU120120G=0.99166667
A=0.00833333G/G=0.98333335
A/G=0.01666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606701 back to top
There is no individual genotype data for ss5606701.

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