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Submitted SNP(ss) Details: ss5606702           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003708
RefSNP(rs#)rs4151421
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606702|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 ATTCGTTAAA AAACCAAAAT AACAACAACA AAAAATTAAA AACCACGTCT GGGGCATGTT
 CTGGGAAAAG ACATGGCTTT AGTTTCTGAT TAAATTCTGA TGTATCCAAT TCTTGCAAAT
 TTCCCTTGGG AAAATGCAGT AATGGCTACT CTAAAGAATT CCATGTTATG CACACAGCTT
 TGGAAGCATA CTCTAATGTA GGGTAACCAG GAATATTGAC GTTGTGGCCA CTGCTTGGAA
 AAAAGAGGAC TGTTT
 M
 TTTCATTTTT TAACTCATTT TATATATTTT AAGTAATGGA ACTATAAAAA ATTCTCTTAT
 AAGTCAAAAC CATACAAGAT ACAGTCTGTT CTTGATTATC CATACCCACA AAGGGTTTCA
 TTAACATAGA CAGTTGAACT CTATAAATTA ACCAGCAAGG GTAGAACCAC TGCCGTGCAG
 TCTGATACTG AGCATCTTGC CTGGAGATGG AATCAAGGCT CAGTCCAACT GCACCTCCAG
 TGACAGATTC CATTC

  Submitted Frequency for ss5606702 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90160C=0.98750001
A=0.01250000
0.025 +/-0.024RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606702 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.99166667
A=0.00833333C/C=0.98333335
A/C=0.01666667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
PDR90160160C=0.98750001
A=0.01250000C/C=0.97500002
A/C=0.02500000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606702 back to top
There is no individual genotype data for ss5606702.

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