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Submitted SNP(ss) Details: ss5606703           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003754
RefSNP(rs#)rs4151422
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed Allele-/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606703|allelePos=256|len=511|taxid=9606|alleles='-/A'|mol=Genomic
 GTCTGGGGCA TGTTCTGGGA AAAGACATGG CTTTAGTTTC TGATTAAATT CTGATGTATC
 CAATTCTTGC AAATTTCCCT TGGGAAAATG CAGTAATGGC TACTCTAAAG AATTCCATGT
 TATGCACACA GCTTTGGAAG CATACTCTAA TGTAGGGTAA CCAGGAATAT TGACGTTGTG
 GCCACTGCTT GGAAAAAAGA GGACTGTTTC TTTCATTTTT TAACTCATTT TATATATTTT
 AAGTAATGGA ACTAT
 N
 AAAAATTCTC TTATAAGTCA AAACCATACA AGATACAGTC TGTTCTTGAT TATCCATACC
 CACAAAGGGT TTCATTAACA TAGACAGTTG AACTCTATAA ATTAACCAGC AAGGGTAGAA
 CCACTGCCGT GCAGTCTGAT ACTGAGCATC TTGCCTGGAG ATGGAATCAA GGCTCAGTCC
 AACTGCACCT CCAGTGACAG ATTCCATTCC TGATTTGAGA GTTTAGATCT TATTTCTGTT
 GCCTTATCTC TGGCC

  Submitted Frequency for ss5606703 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90158A=0.94936699
-=0.05063300
0.096 +/-0.044RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606703 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90158158A=0.94936711
-=0.05063291A/A=0.91139239
-/A=0.07594936
-/-=0.01265823
Pr(chiSq=3.484,df=1)
=0.100		Genotype
Freq.

  Submitted individual genotype for ss5606703 back to top
There is no individual genotype data for ss5606703.

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