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Submitted SNP(ss) Details: ss5606704           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003877
RefSNP(rs#)rs2854352
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize136
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606704|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GCACACAGCT TTGGAAGCAT ACTCTAATGT AGGGTAACCA GGAATATTGA CGTTGTGGCC
 ACTGCTTGGA AAAAAGAGGA CTGTTTCTTT CATTTTTTAA CTCATTTTAT ATATTTTAAG
 TAATGGAACT ATAAAAAATT CTCTTATAAG TCAAAACCAT ACAAGATACA GTCTGTTCTT
 GATTATCCAT ACCCACAAAG GGTTTCATTA ACATAGACAG TTGAACTCTA TAAATTAACC
 AGCAAGGGTA GAACC
 R
 CTGCCGTGCA GTCTGATACT GAGCATCTTG CCTGGAGATG GAATCAAGGC TCAGTCCAAC
 TGCACCTCCA GTGACAGATT CCATTCCTGA TTTGAGAGTT TAGATCTTAT TTCTGTTGCC
 TTATCTCTGG CCTAAGTAAT GTAGCTGGAA GGGAAACTGT CACTAGGAAC AGCATACCAC
 ATTCATTGTT GAAATAATCA AAGGTTAATC ATGTTTCGAG CTGGGTGTGA TGGCGCGTAC
 CTGTAGTCCA TGCTA

  Submitted Frequency for ss5606704 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90136A=0.97058803
G=0.02941200
0.057 +/-0.039RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606704 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90136136A=0.97058821
G=0.02941176A/A=0.94117647
A/G=0.05882353
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090A=0.98888886
G=0.01111111A/A=0.97777778
A/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606704 back to top
There is no individual genotype data for ss5606704.

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