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Submitted SNP(ss) Details: ss5606705           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-003907
RefSNP(rs#)rs4151423
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize136
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606705|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 AGGGTAACCA GGAATATTGA CGTTGTGGCC ACTGCTTGGA AAAAAGAGGA CTGTTTCTTT
 CATTTTTTAA CTCATTTTAT ATATTTTAAG TAATGGAACT ATAAAAAATT CTCTTATAAG
 TCAAAACCAT ACAAGATACA GTCTGTTCTT GATTATCCAT ACCCACAAAG GGTTTCATTA
 ACATAGACAG TTGAACTCTA TAAATTAACC AGCAAGGGTA GAACCACTGC CGTGCAGTCT
 GATACTGAGC ATCTT
 K
 CCTGGAGATG GAATCAAGGC TCAGTCCAAC TGCACCTCCA GTGACAGATT CCATTCCTGA
 TTTGAGAGTT TAGATCTTAT TTCTGTTGCC TTATCTCTGG CCTAAGTAAT GTAGCTGGAA
 GGGAAACTGT CACTAGGAAC AGCATACCAC ATTCATTGTT GAAATAATCA AAGGTTAATC
 ATGTTTCGAG CTGGGTGTGA TGGCGCGTAC CTGTAGTCCA TGCTACTCAG GAGGCTGAGG
 CAGGAGGATC ACATG

  Submitted Frequency for ss5606705 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90136G=0.97794098
T=0.02205900
0.043 +/-0.034RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606705 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90136136G=0.97794116
T=0.02205882G/G=0.95588237
G/T=0.04411765
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606705 back to top
There is no individual genotype data for ss5606705.

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