NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5606706           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-004234
RefSNP(rs#)rs4151424
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize142
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606706|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AGATCTTATT TCTGTTGCCT TATCTCTGGC CTAAGTAATG TAGCTGGAAG GGAAACTGTC
 ACTAGGAACA GCATACCACA TTCATTGTTG AAATAATCAA AGGTTAATCA TGTTTCGAGC
 TGGGTGTGAT GGCGCGTACC TGTAGTCCAT GCTACTCAGG AGGCTGAGGC AGGAGGATCA
 CATGAGCTTG GGAGTTGGAG GCCAGCCTGG GCAACAAAGC AAGACCCCAG TCTTTAAAAA
 AACAAAAAAG CTGAC
 Y
 AGGCATGTTG GCTCACGCCT GTAATGCCAG CACTTTGGGA GGCCAAGATG GGAAGATTGC
 TTGAGGCCAG GAGTTTGAGA GGAGCCTGGG CAACAAAACA AGACCCTGTC TCTAAAACAA
 ATTTTAAAAA ATTAGCCAGT GGCTGTGGCA CACCTGTAGG CTCATCTACT CAGGAGGCTG
 AGGTGGGAGG ATCCCTTGAG CCCAGGAGTT TGAGACTGCA GTGAGCCATG ATTTCACCAC
 TGCACCCCAG CCTGG

  Submitted Frequency for ss5606706 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90142C=0.99295801
T=0.00704200
0.014 +/-0.020RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606706 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90142142C=0.99295777
T=0.00704225C/C=0.98591548
C/T=0.01408451
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-CEU120120C=0.99166667
T=0.00833333C/C=0.98333335
C/T=0.01666667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606706 back to top
There is no individual genotype data for ss5606706.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement