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Submitted SNP(ss) Details: ss5606707           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-004529
RefSNP(rs#)rs4151425
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606707|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 AGGCCAAGAT GGGAAGATTG CTTGAGGCCA GGAGTTTGAG AGGAGCCTGG GCAACAAAAC
 AAGACCCTGT CTCTAAAACA AATTTTAAAA AATTAGCCAG TGGCTGTGGC ACACCTGTAG
 GCTCATCTAC TCAGGAGGCT GAGGTGGGAG GATCCCTTGA GCCCAGGAGT TTGAGACTGC
 AGTGAGCCAT GATTTCACCA CTGCACCCCA GCCTGGATGA CAGAGTGAAA CCCTATTTCA
 AAACAAGAAA AAAAA
 M
 CAAAAACTAA TTATGTTTTG AAGGAGGAAT TGGCAGTCTA GAATAGTGGT CAAGGGCATG
 GATTATAGAG TTAGACTGTT GGGCTCACAT AGTGGTTTAC CTCTTACCGG CTGAGACCTC
 AGGTAAGTTC TTTAACTTCT CCAATTTGAC AGACATCTGT AAATGTCTAC TTTTACAGAT
 GAGAATACTT ATCTAAAAGG GCTGATGTCG GGATTCAGTG AAACCATATG TTTAAGGTAC
 TTTCTACAGG ATCAT

  Submitted Frequency for ss5606707 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90178A=0.99438202
C=0.00561800
0.011 +/-0.016RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606707 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90178178A=0.99438202
C=0.00561798A/A=0.98876405
A/C=0.01123596
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606707 back to top
There is no individual genotype data for ss5606707.

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