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Submitted SNP(ss) Details: ss5606708           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-004731
RefSNP(rs#)rs4151426
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606708|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GCACCCCAGC CTGGATGACA GAGTGAAACC CTATTTCAAA ACAAGAAAAA AAAACAAAAA
 CTAATTATGT TTTGAAGGAG GAATTGGCAG TCTAGAATAG TGGTCAAGGG CATGGATTAT
 AGAGTTAGAC TGTTGGGCTC ACATAGTGGT TTACCTCTTA CCGGCTGAGA CCTCAGGTAA
 GTTCTTTAAC TTCTCCAATT TGACAGACAT CTGTAAATGT CTACTTTTAC AGATGAGAAT
 ACTTATCTAA AAGGG
 M
 TGATGTCGGG ATTCAGTGAA ACCATATGTT TAAGGTACTT TCTACAGGAT CATAGTAAAT
 ACTCAAAAAT TATTAATTAT TCTTCATACT ATTCTTATTA GTAGATAACA CATAGAAATT
 AGATGAATGA AAATGAATTA GCCAACAAGA ATTTATTAAA TGCTTGTCTT TGTTAAGGGG
 AAAGGACAAA AATAAGCAGT CGCATCATGT AAGATGTGCT AGTAGGTAGA GAGATATATG
 AAACATTGAT AAGAG

  Submitted Frequency for ss5606708 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90162C=0.99382699
A=0.00617300
0.012 +/-0.017RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606708 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90162162C=0.99382716
A=0.00617284C/C=0.98765433
A/C=0.01234568
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-CEU120120C=0.99166667
A=0.00833333C/C=0.98333335
A/C=0.01666667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606708 back to top
There is no individual genotype data for ss5606708.

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