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Submitted SNP(ss) Details: ss5606709           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-004970
RefSNP(rs#)rs4151427
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606709|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TACTTATCTA AAAGGGCTGA TGTCGGGATT CAGTGAAACC ATATGTTTAA GGTACTTTCT
 ACAGGATCAT AGTAAATACT CAAAAATTAT TAATTATTCT TCATACTATT CTTATTAGTA
 GATAACACAT AGAAATTAGA TGAATGAAAA TGAATTAGCC AACAAGAATT TATTAAATGC
 TTGTCTTTGT TAAGGGGAAA GGACAAAAAT AAGCAGTCGC ATCATGTAAG ATGTGCTAGT
 AGGTAGAGAG ATATA
 Y
 GAAACATTGA TAAGAGAAGA CTACAGTTTA ACAAAGTCAC TGGCGTTGAA TTGTATAATA
 TTATCTATGG GTTTTTATCT TTTTGTTGTT ATCTTTATCC TATTTTCCCA AACAGCTTTA
 GCTATTACAT TTACTTTCCT TCACAGAAGT GTTTTCCTGC TTTGAAGTAT ATTTGACTTA
 CCATGCAAGC AAATATTTTT CACTGTGTGG TATCCTTATT TTGGAATGAC CATGAAAAAG
 ATAATCATAT GTTTA

  Submitted Frequency for ss5606709 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178T=0.98876399
C=0.01123600
0.022 +/-0.022RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606709 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI120120T=0.93333334
C=0.06666667T/T=0.86666667
C/T=0.13333334
Pr(chiSq=0.039,df=1)
=1.000		Genotype
Freq.
PDR90178178T=0.98876405
C=0.01123596T/T=0.97752810
C/T=0.02247191
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606709 back to top
There is no individual genotype data for ss5606709.

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