NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5606710           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-005126
RefSNP(rs#)rs1981434
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606710|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 AGCCAACAAG AATTTATTAA ATGCTTGTCT TTGTTAAGGG GAAAGGACAA AAATAAGCAG
 TCGCATCATG TAAGATGTGC TAGTAGGTAG AGAGATATAT GAAACATTGA TAAGAGAAGA
 CTACAGTTTA ACAAAGTCAC TGGCGTTGAA TTGTATAATA TTATCTATGG GTTTTTATCT
 TTTTGTTGTT ATCTTTATCC TATTTTCCCA AACAGCTTTA GCTATTACAT TTACTTTCCT
 TCACAGAAGT GTTTT
 S
 CTGCTTTGAA GTATATTTGA CTTACCATGC AAGCAAATAT TTTTCACTGT GTGGTATCCT
 TATTTTGGAA TGACCATGAA AAAGATAATC ATATGTTTAA ATTTGAAGTG TAATGTTTTT
 CTAAGATAAA ATAAGATCTT AAAGTATTTA ATAATGTTCT TTTTCACAGT AGTGTTATGT
 GCAAACTATT GAAACAAGTA TGTACTGAAT CAATTTGATT TATAAGTATA TGCCAATTAT
 ATGATTATTT TCATT

  Submitted Frequency for ss5606710 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176C=0.59659100
G=0.40340900
0.481 +/-0.020RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606710 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90176176C=0.59659094
G=0.40340909C/C=0.43181819
C/G=0.32954547
G/G=0.23863636
Pr(chiSq=8.752,df=1)
=0.005		Genotype
Freq.

  Submitted individual genotype for ss5606710 back to top
There is no individual genotype data for ss5606710.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement