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Submitted SNP(ss) Details: ss5606711           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-005168
RefSNP(rs#)rs4151428
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606711|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 AAGGACAAAA ATAAGCAGTC GCATCATGTA AGATGTGCTA GTAGGTAGAG AGATATATGA
 AACATTGATA AGAGAAGACT ACAGTTTAAC AAAGTCACTG GCGTTGAATT GTATAATATT
 ATCTATGGGT TTTTATCTTT TTGTTGTTAT CTTTATCCTA TTTTCCCAAA CAGCTTTAGC
 TATTACATTT ACTTTCCTTC ACAGAAGTGT TTTCCTGCTT TGAAGTATAT TTGACTTACC
 ATGCAAGCAA ATATT
 K
 TTCACTGTGT GGTATCCTTA TTTTGGAATG ACCATGAAAA AGATAATCAT ATGTTTAAAT
 TTGAAGTGTA ATGTTTTTCT AAGATAAAAT AAGATCTTAA AGTATTTAAT AATGTTCTTT
 TTCACAGTAG TGTTATGTGC AAACTATTGA AACAAGTATG TACTGAATCA ATTTGATTTA
 TAAGTATATG CCAATTATAT GATTATTTTC ATTTGGTAGG CTTGAGTTTG AAGAAACAGA
 AGAACCTGAT TTTAC

  Submitted Frequency for ss5606711 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176T=0.99431801
G=0.00568200
0.011 +/-0.016RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606711 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.99166667
G=0.00833333T/T=0.98333335
G/T=0.01666667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120T=0.96666664
G=0.03333334T/T=0.93333334
G/T=0.06666667
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.
PDR90176176T=0.99431819
G=0.00568182T/T=0.98863637
G/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606711 back to top
There is no individual genotype data for ss5606711.

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