NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5606713           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-005797
RefSNP(rs#)rs4151429
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606713|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 ATTTTTTTTT CTCATTTTAA AAACAACTTC AAATCACTAT ACAAAAATTG AAAGATAGAA
 AAATATAAAG ACAATAAAAG CTAATAATAA TTCCATTACC CAGAGGAAAT TTACCTCTGC
 TAACATTAAA AATGTTTGAG GCCGGGCACG GTGGTTCATG CCTGTAATCC TACCACTTTG
 GGAGGCTGAG GCAGGTGGAT TGCCTGAGCT CAGGAGTTCG AGACCAGCCT GGGCAACATG
 GTGAAACCCT GTCTC
 Y
 ACTAAAATAC AAAAAAAAAA AAAAAAATTA GCAGGGTGTG GCGTGCGCCT GTAGTCCCAG
 CTATTTGGGA AGCTGAGGCA GGAGAATTGC TTGAACCCAG GAGGTGGAGG TTACAGTGAG
 CCGAGATCGT GCCACTGCAC TCCAGCCTGG CAACAGAGCG AGAGTCTGTC TCAAAAAAAA
 AAAAAGTTTG AAAAAAATTC CTCCATAAAT GCCTCCCACC AAACTATTTT AAAGCAGGTC
 TTAGTTATAT TTTAT

  Submitted Frequency for ss5606713 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90162T=0.98148102
C=0.01851900
0.036 +/-0.029RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606713 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90162162T=0.98148149
C=0.01851852T/T=0.96296299
C/T=0.03703704
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606713 back to top
There is no individual genotype data for ss5606713.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement