NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5606714           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-014324
RefSNP(rs#)rs4151430
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize160
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606714|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CAACAGTGTA TAAGCATTCC CTTTTCACTG CATCCTCGCC AACATCTATT GTTTTTTTAC
 TTTATTTTCC ATATAAAAAG GGGTTTATTT AGATGTTAGA ATCATCTAGT GATTCAGAAA
 GATTGGACAT GAATCCACCC AGGCCCAGGG CTGAGCTGCA GAGCAGCCGC TGACATCCGC
 GGGGATTTCA CATGCAACAG GGAGCTCTCA CGTGCTTGCT GGCCATTGTG CTTTAAATCG
 TTTTTTCCAG CGGAC
 R
 GCTGTGACTG CAGTTTTCAA ATGTGCTCTG GCCTCCAAGG ACCAGGGGGG CGGTGGGGGG
 CGGGGGTGTC CTCTGTATAA AAAGTGCTGT CCTGCGAGCT TCCCGACGGA CACTTTGGGG
 CATCTGAGCG ATTCCCGGGG AGGGCAGCTC TGCCTTCCTC AGGCTACCAC TGCAGCCACC
 GACGGACATT CTCACCAGCA ATCAACCAAA AAACATCAGA GTCTCTGTGA ACTTGGCTGC
 GATGATAAGA ACCAA

  Submitted Frequency for ss5606714 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90160A=0.99374998
G=0.00625000
0.012 +/-0.017RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606714 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90160160A=0.99374998
G=0.00625000A/A=0.98750001
A/G=0.01250000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5606714 back to top
There is no individual genotype data for ss5606714.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement