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Submitted SNP(ss) Details: ss5606715           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-015208
RefSNP(rs#)rs2854345
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606715|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 AACTCGAGGG CTTAGACCTT CACTGCTGAG CTGCCGCCAC TGTCCTCCGT GCGCGGAGTG
 TCGCTGAAGT CACTGGCGTC ACTAACCAAG GCGTGCCCGC CCAAGGTGCC CTGGTCCTGG
 TCGTCCCTAT CGATGACCCT TCGTCAATAC CTCAGGTCTA AAATGCTTTC CTCCGAGCCC
 GAGTTCCTCC TGTCGGGCAA ACTCCGCCCT GTCTGTGCCT TGCTGCTTGG CCAGGGCCCG
 CCGTCCTTCT TCGCC
 R
 GCAAGTGTGG GCTTCCAAAG ACAGGGCTGG GCCCGGCCTG GGCCTCCCTG AAGGCAGAGA
 AGGACGGGCC CTGTGGAGGC AGCCCCATGT CGGGCTGAAG AGGCTGGCCT GCCTGCCCCC
 CTGGGAGACA CCCTTTCCAA AATGGAAGAG CTGGGTGGAC AGCGCGGGGA GAAGCCCACA
 AGGGGTAGGC TGGGCAGGCC CCAGGCGGGG CCCTCGGACC CCTTGTCTTT CCCGCTCCCG
 ACGCCCCGCC TCCAC

  Submitted Frequency for ss5606715 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90172A=0.81976700
G=0.18023300
0.295 +/-0.053RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606715 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90172172A=0.81976742
G=0.18023255A/A=0.69767439
A/G=0.24418604
G/G=0.05813954
Pr(chiSq=2.593,df=1)
=0.150		Genotype
Freq.

  Submitted individual genotype for ss5606715 back to top
There is no individual genotype data for ss5606715.

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