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Submitted SNP(ss) Details: ss5606718           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-016996
RefSNP(rs#)rs4151432
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606718|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CCACCATCTT TCACCACCTC CCGCGTTTTC TTGGGCGTGG ACGGCCTCAT GGCATGGCCG
 CCGCCTCTAC GTTTCCTTTT GCAGCTCAGC AGCGGGTCCG GTGTTTTAGA GAGGGGGGCC
 TTGGGGCCAC TGGTCTGGCT GTTGGGGCCA GGCGGTGAAA GTGGGCCCTG GGCAGCCTGC
 GAGCAGCTCT CACCTCTGGC CAGCAAACTC CCCGACTATG CCTGGAGGGT CAAAACGTCT
 GGATTTCCTG ATCGA
 Y
 GCTGTCGTCG CTGTCCACGG AGCTACTGTC GCCGTCAGAG CGGGAAGGCA CGTTCAGGGA
 GTAGAAGCGT GGGCTTGCAG AAAGGGACCT GTTGCTGCCT TACATGGGGG CCGGCAGGGT
 AGTCTTGGAA ATGCCCAAGA TTGCTTCCGC GCGCGTCAGT TCAGCGGACG TGTCTGCCTG
 GCACGAGGAC CGTTCTACAA ACTCGTTCCT GGAAGCCGGG CTCGCTGGAG GCGGAGCTTT
 GGTTTCCTTC GGGAG

  Submitted Frequency for ss5606718 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90168T=0.99404800
C=0.00595200
0.012 +/-0.017RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606718 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90168168T=0.99404764
C=0.00595238T/T=0.98809522
C/T=0.01190476
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI114114T=0.98245615
C=0.01754386T/T=0.96491230
C/T=0.03508772
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606718 back to top
There is no individual genotype data for ss5606718.

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