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Submitted SNP(ss) Details: ss5606719           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-017078
RefSNP(rs#)rs4151433
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606719|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 AGCTCAGCAG CGGGTCCGGT GTTTTAGAGA GGGGGGCCTT GGGGCCACTG GTCTGGCTGT
 TGGGGCCAGG CGGTGAAAGT GGGCCCTGGG CAGCCTGCGA GCAGCTCTCA CCTCTGGCCA
 GCAAACTCCC CGACTATGCC TGGAGGGTCA AAACGTCTGG ATTTCCTGAT CGATGCTGTC
 GTCGCTGTCC ACGGAGCTAC TGTCGCCGTC AGAGCGGGAA GGCACGTTCA GGGAGTAGAA
 GCGTGGGCTT GCAGA
 M
 AGGGACCTGT TGCTGCCTTA CATGGGGGCC GGCAGGGTAG TCTTGGAAAT GCCCAAGATT
 GCTTCCGCGC GCGTCAGTTC AGCGGACGTG TCTGCCTGGC ACGAGGACCG TTCTACAAAC
 TCGTTCCTGG AAGCCGGGCT CGCTGGAGGC GGAGCTTTGG TTTCCTTCGG GAGCTTGTGG
 GGAATGGTCA GCGTCTAGGC ACCCCGGGCA AGGGTCTGTG GCCTTGGTGG CCACTGGCTT
 CCTCTAGCTG GGTGT

  Submitted Frequency for ss5606719 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90162A=0.98765397
C=0.01234600
0.024 +/-0.024RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606719 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90162162A=0.98765433
C=0.01234568A/A=0.98765433
C/C=0.01234568
Pr(chiSq=79.025,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss5606719 back to top
There is no individual genotype data for ss5606719.

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