Submitted SNP(ss) Details: ss5606720

Submitted SNP(ss) Details: ss5606720

Submitter
Handle	EGP_SNPS
Submitter SNP ID	RB1-017214
RefSNP(rs#)	rs4151434
Submitted Batch ID	RB1-PDR90-102902
Submitted Date	Dec 04, 2002
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Dec 4 2002 12:00:00:000AM

Resource Links
GenBank Accession	AF551763
Submitted Gene Name	RB1
Submitted Gene ID	5925
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	162
Population	PDR90

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGCCTGGAGG GTCAAAACGT CTGGATTTCC TGATCGATGC TGTCGTCGCT GTCCACGGAG
 CTACTGTCGC CGTCAGAGCG GGAAGGCACG TTCAGGGAGT AGAAGCGTGG GCTTGCAGAA
 AGGGACCTGT TGCTGCCTTA CATGGGGGCC GGCAGGGTAG TCTTGGAAAT GCCCAAGATT
 GCTTCCGCGC GCGTCAGTTC AGCGGACGTG TCTGCCTGGC ACGAGGACCG TTCTACAAAC
 TCGTTCCTGG AAGCC
 R
 GGCTCGCTGG AGGCGGAGCT TTGGTTTCCT TCGGGAGCTT GTGGGGAATG GTCAGCGTCT
 AGGCACCCCG GGCAAGGGTC TGTGGCCTTG GTGGCCACTG GCTTCCTCTA GCTGGGTGTT
 TTCCTGTGGG TCTCGCGCAA GGCACTTTTT TGTGGCGCTG CTTGTGCTGT GTGCGGGGTC
 AGGCGTCCTC TCTCCTCCCG GCGCTGGGCC CTCTGGGGCA GGTCCCCGTT GGCCTCCTTG
 CGTGTTTGCC GCAGC

Submitted Frequency for ss5606720

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	162	G=0.82098800	A=0.17901200	0.294 +/-0.055			RB1-PDR90-102902	EGP_SNPS

dbSNP summary of Genotypes for ss5606720

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-JPT	88	88	G=0.86363637	A=0.13636364	G/G=0.75000000 A/G=0.22727273 A/A=0.02272727	Pr(chiSq=0.054,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	G=0.87777776	A=0.12222222	G/G=0.80000001 A/G=0.15555556 A/A=0.04444445	Pr(chiSq=3.404,df=1) =0.100	Genotype Freq.
HapMap-CEU	120	120	G=0.98333335	A=0.01666667	G/G=0.96666664 A/G=0.03333334	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HapMap-YRI	120	120	G=0.51666665	A=0.48333332	A/G=0.46666667 G/G=0.28333333 A/A=0.25000000	Pr(chiSq=0.258,df=1) =0.655	Genotype Freq.
PDR90	162	162	G=0.82098764	A=0.17901234	G/G=0.79012346 A/A=0.14814815 A/G=0.06172840	Pr(chiSq=50.551,df=1) =0.001	Genotype Freq.

Submitted individual genotype for ss5606720

There is no individual genotype data for ss5606720.

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