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Submitted SNP(ss) Details: ss5606722           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-018261
RefSNP(rs#)rs4151436
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize156
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606722|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGCCACCACC TGAGCCAGGT ACAAGTTTTG GGGGGACACA CGGAAGTCGG GGCACTGCCG
 TGAGATAGTT CTGGCTTACA TCTACTGCCA CTGCCTGCAG CCCTGGAAGG CTGGGCTGCG
 CCTGGCTGGC CCCTGCCAGC CCCGGGCTGT GCGGCTCCAC TCTTTGCCTT TAGGTACTCC
 CGGATGGCTT CCGCAATGTC CCGGTCCACG GAATCATCAT TGAATCTAGC ACCAACGGGC
 CAAAGTCTGC AGTTT
 Y
 CTCCTCCCTC ATGGGGTCAA AGTCAGCAAC AAGACCACAG GCAGGCAATG CGGGCTGCTC
 CTTGTGCACG GTGGGCTTGG CAGCTGGCTT GGCGTCTGCC CTGTGGCCCC TCTGTGCAGC
 GCGCTCATCG GTGGTGCCCC GAGCAACCCC GCTGCGCTGC AGCGTGCTGA TGAGCATCTG
 CACCCGGGCG CTCACCGACA CGCTCTCCAC CCCCTCGTCA GCCTCCGAGA AGCACCCGGG
 GAACCTAAAG CTCCC

  Submitted Frequency for ss5606722 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90156C=0.98717898
T=0.01282100
0.025 +/-0.025RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606722 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90156156C=0.98717946
T=0.01282051C/C=0.98717946
T/T=0.01282051
Pr(chiSq=76.026,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss5606722 back to top
There is no individual genotype data for ss5606722.

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