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Submitted SNP(ss) Details: ss5606724           
Submitter
HandleEGP_SNPS
Submitter SNP IDRB1-025347
RefSNP(rs#)rs4151438
Submitted Batch IDRB1-PDR90-102902
Submitted DateDec 04, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 4 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize166
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5606724|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 ATTTCAGTAT CTAAAATGTG CTTTTTGAGA GGCCATTGGT CAATATGTAT ACATTTAAAA
 TAAACCATAT AATTTTACTA GTAAGAAAGC CAGTAGTTAA GTTCAATTCA AATTGGATTT
 CACAAGTTAG TAATTTAAAT CCTTGGACAA AGTTACAGAA AGTGCATCTT CTTGTTTTCC
 ATCTTCATAC AATGTTAAAT TTTTTTTTTT TGGTGTTTAT ACCTTTTAAA AAATAAAAGC
 AGCCAAATAC TTAAG
 S
 AATATGTACA TTTAAATTTT TGGTGGTGGT TTGTATTTTA AAAGAAACAG TTTTCTTATG
 ATTCGCTTCA AGTTCTGGTG GAAATGCTTA CAGGAACTAG CTAATAAACA AAAAACAAGA
 GAAGCACATT CAAAATACTG ATTTACTTTG GTAGCAAATG GTTTTTCTTT GAAGATTAAT
 GAAGATAGAC AAGACCCATT AAGGTGAAGT GGGCTATTTC AAATATTCAA CAGTTTACAT
 ATAAAAAAGT TATTT

  Submitted Frequency for ss5606724 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90166C=0.95180702
G=0.04819300
0.092 +/-0.042RB1-PDR90-102902EGP_SNPS


  dbSNP summary of Genotypes for ss5606724 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90166166C=0.95180720
G=0.04819277C/C=0.90361446
C/G=0.09638554
Pr(chiSq=0.020,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss5606724 back to top
There is no individual genotype data for ss5606724.

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