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Submitted SNP(ss) Details: ss113803998           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_1292411_chr6_2899618
RefSNP(rs#)rs1040858
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 18 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:161

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss113803998|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CAGCAATGCA TGGCAACTGT AGACTGTGCT ACCCAAGAGG GAGGCAGCTT GAGATCCACA
 CTGCGAATTT TTTATGTTAC TTGTGAAAGG AAAAACTATA TTAACATTAA CACACTAACC
 CCCTCCTCAA AATTAAAACG TGGATTGATC CAGAAGAGGT ATACCAAACA CTGAAAGGCA
 TCACGGGTAC ACCAAGGAAA
 Y
 AGGGAGAAAT CAGAGAGAAC AGAACACATT GAGCATTTCC AAAATGTCAA ATAATGGCAA
 CTGATTTCAG AAGCAGATTT TTTAAGTTTG CAGTTATTCA GAGAAAAAAA AATCATTCCT
 GTTTACAATT GACAGTCTTG TGAAGGAACT GACAATAAAA TGGATTAAGA GGTTATTACA
 AAAGTAGAAT AACAATACAT

  Submitted Frequency for ss113803998 back to top
There is no frequency submission for ss113803998.


  dbSNP summary of Genotypes for ss113803998 back to top
No sufficient data to compute Hardy-weinberg probability for ss113803998.


  Submitted individual genotype for ss113803998 back to top
There is no individual genotype data for ss113803998.

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