Submitted SNP(ss) Details: ss1230

Submitted SNP(ss) Details: ss1230

Submitter
Handle	WIAF
Submitter SNP ID	WIAF-2117
RefSNP(rs#)	rs1205
Submitted Batch ID	RESEQ
Submitted Date	Jan 23, 1999
Publication Cited	9582121
First entry to dbSNP	Jan 23 1999 12:00:00:000AM

Resource Links
STS Accession	G06858
GenBank Accession	T73247
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	stSG1427,stSG1427
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	RESEQ
Ascertainment Samplesize	14
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable
PCR Confirmed	Y

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Comment
CONFIRMED by second method

Fasta sequence (Legend)

 GATCTGGTTC CAGACAAGGC TGATTCAGAG ACTCCACGTG GTCAAGGCTC TGTTGTTTGT
 CAATCCCTTG GCTCCTCCAC TTCCAGTTTG GCTTCTGTCC TCA
 Y
 AGTCTCTCTC CATGTGGCAA ACAAGATGGC TACTGGTGGT CCCAGGTTCA CGTCCTCTCA
 GCTTGGAAAT CCAGCAGCAA GAAGATGTCT CACTCCCAAA GTCCATAACT CAATCCTTGG
 GAAG

Submitted Frequency for ss1230

There is no frequency submission for ss1230.

dbSNP summary of Genotypes for ss1230

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
NIHPDR - NORTH AMERICA	180	180	C=0.61666667	T=0.38333333	C/T=0.43333334 C/C=0.40000001 T/T=0.16666667	Pr(chiSq=0.626,df=1) =0.439	Genotype Freq.

Submitted individual genotype for ss1230

There is no individual genotype data for ss1230.

Disclaimer Privacy statement